Research : NMR Spectroscopy in the Bryce group

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General research interests:  solid-state NMR spectroscopy of low-frequency quadrupolar nuclei, halogen bonding, double-rotation NMR, biomolecular NMR spectroscopy, solid-state NMR of inorganic and bioinorganic systems, interpretation and quantum chemical calculation of NMR interaction tensors.

Selected active projects are summarized below. 


Development and Application of Chlorine, Bromine, and Iodine Solid-State NMR Spectroscopy.

Chlorine, bromine, and iodine are important elements in a variety of materials, catalysts, pharmaceuticals, and can partake in biologically important processes (e.g., ion transport channels).

There exist quadrupolar NMR-active isotopes of all of these elements: 35Cl, 37Cl, 79Br, 81Br, and 127I.  Historically, studies of these nuclei have been challenging due to their large nuclear electric quadrupole moments (Br, I) and low resonance frequencies (Cl).  However, the availability of high field NMR spectrometers (i.e., > 18.8 T), the development of signal-enhancement techniques (RAPT, DFS, hyperbolic secants, QCPMG, WURST), and the use of stepped-frequency data acquisition methods have made the observation of these quadrupolar halogen nuclides more feasible (see representative publications below). 

We are pursuing the study of these nuclides in a variety of compounds.  For example, after pioneering studies which related the chlorine quadrupolar and chemical shift tensors to the hydrogen bonding environment in amino acid hydrochlorides, we have since probed the chlorine environment in a variety of group 13 chloride catalysts, and demonstrated the sensitivity of the halogen NMR parameters to hydration in alkaline earth halides.  We have also proposed a modified structure for MgBr2 using ‘NMR crystallography’ methods coupled with advanced quantum chemical software.  Recent extensions of these methods include studies of triphenylphosphonium bromides (high-temperature ionic liquids), and covently-bound chlorine materials.


Representative publications:
F. A. Perras and D. L. Bryce
Direct Investigation of Covalently-Bound Chlorines via 35Cl Solid-State NMR and Exact Spectral Line Shape Simulations. 
Angew. Chem. Int. Ed., in press (2012).


K. M. N. Burgess, I. Korobkov, and D. L. Bryce
A Combined Solid-State NMR and X-ray Crystallography Study of the Bromide Anion Environments in Triphenylphosphonium Bromides.
Chem. Eur. J. (2012), in press.

C. M. Widdifield and D. L. Bryce
Solid-State 127I NMR and GIPAW DFT Study of Metal Iodides and their Hydrates: Structure, Symmetry, and Higher-Order Quadrupole-Induced Effects.
J. Phys. Chem. A, 114, 10810-10823 (2010).

C. M. Widdifield and D. L. Bryce
Solid-State 79/81Br NMR and Gauge-Including Projector-Augmented Wave Study of Structure, Symmetry, and Hydration State in Alkaline Earth Metal Bromides.
J. Phys. Chem. A, 114, 2102-2116 (2010).
 

C. M. Widdifield and D. L. Bryce
Crystallographic Structure Refinement with Quadrupolar Nuclei: a Combined Solid-State NMR and GIPAW DFT Example Using MgBr2.  
Phys. Chem. Chem. Phys., 11, 7120-7122 (2009).


R. P. Chapman and D. L. Bryce
Application of Multinuclear Magnetic Resonance and Gauge-Including Projector-Augmented Wave Calculations to the Study of Solid Group 13 Chlorides. 
Phys. Chem. Chem. Phys., 11, 6987-6998 (2009).


bromine NMR   

Characterization of High-Order Quadrupole-Induced Effects in Solid-State Nuclear Magnetic Resonance.

When performing solid-state NMR experiments upon quadrupolar nuclei, it is nearly always the case that one must also account for the coupling between the nuclear electric quadrupole moment (Q) and the local electric field gradient (EFG) from the lattice and/or molecules which surround the probe nuclei.  This interaction between the Q and the EFG results in often drastic effects on the NMR line shape.  In many cases, this “quadrupolar interaction” will dominate all other line shape broadening mechanisms, such as magnetic shielding anisotropy and dipole-dipole coupling.  In order to model many of the commonly-observed solid-state NMR line shapes of quadrupolar nuclei, analytical models which exploit second-order perturbation theory are used.  While these models are very convenient to use and have benefited the solid-state NMR community for more than two decades, current developments in high-field magnet technology, probe design, and the availability of sensitivity-enhancing pulse sequences, allow one to probe quadrupolar interactions that are so strong that they compete in magnitude with the strength of the Zeeman interaction.  When these two interactions are similar in strength, second-order perturbation theory loses its relevance as the high-field approximation (i.e., dominant Zeeman interaction) is invalid.  We are making active efforts towards the experimental observation of high-order quadrupole-induced effects (HOQIE) on solid-state NMR spectra, and as such have already characterized a number of examples for spin-5/2 (iodine-127 and rhenium-185/187, see references below).  Additional extensions have been made towards spin-3/2 nuclei, such as chlorine-35/37.  As well, we wish to create efficient and user-friendly software which can be used to model the Zeeman-Quadrupolar interactions simultaneously.  The fruit of this labour is the QUEST program (see software page).

Representative publications:
F. A. Perras and D. L. Bryce
Direct Investigation of Covalently-Bound Chlorines via 35Cl Solid-State NMR and Exact Spectral Line Shape Simulations.
Angew. Chem. Int. Ed., in press (2012).


C. M. Widdifield, A. D. Bain, and D. L. Bryce,
Definitive Solid-State 185/187Re NMR Spectral Evidence for and Analysis of the Origin of High-Order Quadrupole-Induced Effects for I = 5/2. 
Phys. Chem. Chem. Phys., 13, 12413-12420 (2011). (cover article)
 

C. M. Widdifield and D. L. Bryce
Solid-State 127I NMR and GIPAW DFT Study of Metal Iodides and their Hydrates: Structure, Symmetry, and Higher-Order Quadrupole-Induced Effects.
J. Phys. Chem. A, 114, 10810-10823 (2010).


covalent chlorine Angew Chemie 2012

Halogen Bonding.

The resurgence of halogen bonding (XB), the non-covalent interaction between an electron donor, such as a Lewis base or π electrons, and a covalently bound halogen, has had an impact on multiple fields of chemistry. It has been observed in biological processes such as molecular recognition, and is being exploited as having a key role in drug design. Also, since XB is a strong and highly directional interaction, it is used in the architecture of new materials. Usually, this interaction is characterized using X-ray crystallography. However, we are interested in characterizing the XB interaction by solid-state NMR, since it delivers information at the atomic level, permitting us to elucidate the molecular and electronic structure. Using signal enhancement methods and sometimes an ultrahigh magnetic field (21.1 T), we can determine the NMR parameters of the nuclei directly involved in XB. The systems we study are synthesized in our laboratory and we have been able to observe a direct correlation between the NMR parameters to its halogen bonding environment, and for certain groups of XB compounds the NMR data are indicative of when such compounds pack in the same space group. Our main objective is to determine trends in the NMR parameters which could be related to their halogen bonding environment. Also, we use density functional theory calculations of the NMR parameters to compare with the experimental results in order to validate trends.

Representative publications:

R. J. Attrell, C. M. Widdifield, I. Korobkov, and D. L. Bryce
Weak Halogen Bonding in Solid Haloanilinium Halides Probed Directly via Chlorine-35, Bromine-81, and Iodine-127 NMR Spectroscopy
Cryst. Growth Des., 12, 1641-1653 (2012).

J. Viger-Gravel, I. Korobkov, and D. L. Bryce
Multinuclear Solid-State Magnetic Resonance and X-ray Diffraction Study of Some Thiocyanate and Selenocyanate Complexes Exhibiting Halogen Bonding
Cryst. Growth Des., 11, 4984-4995 (2011)
halogen bonding

Information from chemical shift tensors for 'challenging' quadrupolar nuclei; polymorphism; NMR crystallography.

The vast majority of elements in the periodic table are amenable to some kind of NMR study, which makes solid-state NMR an obvious choice when probing the local electronic environment surrounding the nuclei under investigation in crystalline solids.  It is often perceived that, for quadrupolar nuclei (i.e., spin quantum number, I > ½), the NMR line shape is dominated by the quadrupolar interaction.  Our work focuses on the quantitative observation of the subtle effects of chemical shift anisotropy (CSA) in quadrupolar nuclei.  The 43Ca solid-state NMR study of CaCO3 has led us to show that the calcite, vaterite, and aragonite polymorphs each depend differently upon the chemical shift span.  It was also shown that the largest component of the 79/81Br chemical shift tensor in a series of triphenylphosphonium bromides was dependent upon the bromide-phosphorus distance in the crystal structure.  These examples exemplify that minute changes in the crystal structure can be detected with large differences in the chemical shift tensor, which has great implication in the emerging field of NMR crystallography.  The use of National Ultrahigh Field NMR Facility (i.e., B0 = 21.1 T), which is in close proximity to the University of Ottawa, is essential for current and future studies such as these as the effects of CSA are more apparent in the line shapes obtained at higher magnetic fields.

Representative publications

D. L. Bryce, E. B. Bultz, and D. Aebi
Calcium-43 Chemical Shift Tensors as Probes of Calcium Binding Environments.  Insight into the Structure of the Vaterite CaCO3 Polymorph by 43Ca Solid-State NMR Spectroscopy.
J. Am. Chem. Soc., 130, 9282-9292 (2008).

D. L. Bryce
Calcium Binding Environments Probed by 43Ca NMR Spectroscopy
Dalton Trans., 39, 8593-8602 (2010).

K. M. N. Burgess, I. Korobkov, and D. L. Bryce
A Combined Solid-State NMR and X-ray Crystallography Study of the Bromide Anion Environments in Triphenylphosphonium Bromides
Chem. Eur. J. (2012), in press.

calcium43

Biomolecular NMR Applications.

Characterization of biomolecular structure is necessary to gain information on their functionality. Using methods such as liquid-crystal NMR spectroscopy, we were able to develop novel applications of residual dipolar couplings as a means of structure refinement for nucleic acids. Also, hydrogen bonds are shown to be a common and functionally important feature in structured proteins. Through the use of scalar (J) coupling, we were able to unambiguously identify experimentally for the 1st time, the donor and acceptor groups in the weak hydrogen bond in CH/π interactions in proteins. This line of research involves collaboration with Dr. Jerome Boisbouvier, Institut de Biologie Structurale- LNMR, CNRS Grenoble.

Representative publications:

M. J. Plevin, D. L. Bryce, and J. Boisbouvier
Direct Detection of CH/pi Interactions in Proteins
Nature Chem. 2, 466-471 (2010)

H. Van Melckebeke, M. Devany, C. Di Primo, F. Beaurain, J.-J. Toulme, D. L. Bryce, and J. Boisbouvier
Liquid Crystal NMR Structure of HIV TAR RNA Bound to its SELEX RNA Aptamer Reveals the Origins of the High Stability of the Complex
Proc. Natl. Acad. Sci. USA, 105, 9210-9215 (2008).
RNA

Quantum chemical calculations of NMR parameters.

It may often be difficult to rationalize the NMR parameters in terms of chemical structure.  This issue may be addressed with the use of quantum chemical calculations of these NMR parameters, as the effects of structural variations can be probed independently of experiment.  Quantum chemical calculations then make it possible to determine what “causes” the observed NMR parameters.  We use several quantum chemical software packages such as Gaussian09, the Amsterdam Density Functional (ADF) program, and CASTEP to calculate electric field gradient, magnetic shielding, and spin-spin coupling tensors for various applications.  We have access to two high performance computer clusters; namely the WOOkie cluster at the University of Ottawa and the HPCVL cluster in Kingston.  To aid in the analysis of the computational data we have also developed, and are maintaining, a program for summarizing the output of Gaussian, ADF, and CASTEP NMR calculations entitled EFGShield.  The latest version of EFGShield can be downloaded here: http://mysite.science.uottawa.ca/dbryce/soft.html

Representative publications:

S. Adiga, D. Aebi, and D. L. Bryce
EFGShield: A Program for Parsing and Summarizing the Results of Electric Field Gradient and Nuclear Magnetic Shielding Tensor Calculations
Can. J. Chem., 85, 496-505 (2007). 

D. L. Bryce and J. Autschbach
Relativistic Hybrid Density Functional Calculations of Indirect Nuclear Spin-Spin Coupling Tensors. Comparison with Experiment for Diatomic Alkali Metal Halides.
Can. J. Chem., 87, 927-941 (2009).
EFGShield

Development of DOuble-Rotation (DOR) NMR methodology and applications.

Some 3/4 of the NMR active isotopes including 11B, 17O, 23Na and 27Al are quadrupolar nuclei (possess a spin greater than 1/2).  These nuclei are strongly affected by the quadrupolar interaction which cannot be removed completely by magic angle spinning.  Using a specialized double-rotation (DOR) probe we can measure high resolution NMR spectra of such nuclei in one dimension.  This gives DOR a certain advantage over other MAS-based methods which require time consuming, and insensitive, 2D acquisitions.  With DOR NMR, it is then possible to probe insensitive nuclei, and even obtain high-resolution, homonuclear correlation spectra.  This makes it possible to not only resolve multiple sites, but also probe the connectivities between them.  We are interested in using DOR for measuring internuclear distances and studying biological samples.  

Representative publications: 

F. A. Perras and D. L. Bryce
Residual Dipolar Coupling Between Quadrupolar Nuclei Under Magic-Angle Spinning and Double-Rotation Conditions
J. Magn. Reson., 213, 82-89 (2011). 

F. A. Perras, I. Korobkov, and D. L. Bryce
23Na Double-Rotation NMR of Sodium Nucleotides Leads to the Discovery of a New dCMP Hendecahydrate
Phys. Chem. Chem. Phys., 14, 4677-4681 (2012)
  DOR NMR  

Cation-pi Interactions Studied by Solid-state NMR

Cation-pi interactions have been found to play a key structural role in proteins, molecular receptors, zeolites, as well as more simple chemical compounds. Unfortunately, crystallographic studies of proteins do not always provide conclusive details on the location or identity of the bound ions.  We are carrying out a systematic investigation of the cation-pi interaction, and its effects on the electronic structure about the nuclei involved in the interaction, by applying solid-state NMR  spectroscopic methods.  Ultimately, it is our hope that 23Na and 39K NMR signatures may be developed as "fingerprints" for the presence or absence of cation-pi interactions.


Representative publications:

P. K. Lee, R. P. Chapman, L. Zhang, J. Hu, L. J. Barbour, E. K. Elliott, G. W. Gokel, and D. L. Bryce
K-39 Quadrupolar and Chemical Shift Tensors for Organic Potassium Complexes and Diatomic Molecules
J. Phys. Chem. A, 111, 12859-12863 (2007).

D. L. Bryce, S. Adiga, E. K. Elliott, and G. W. Gokel
A Solid-State 23Na NMR Study of Sodium Lariat Ether Receptors Exhibiting Cation-pi Interactions. 
J. Phys. Chem. A, 110, 13568-13577 (2006).

cation-pi



Funding and Support: Our research program is generously supported by the Natural Sciences and Engineering Research Council of  Canada (NSERC), the Ontario Ministry of Research and Innovation Early Research Award (ERA), the Canada Foundation for Innovation, the University of Ottawa Faculty of Science, a U of O Interfaculty Research Initiative grant, and the France-Canada Research Fund.


NSERC     ontario     cfi       
  uOttawa



Last updated: April 18, 2012  DLB

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